Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
BLCA | rs62346179 | chr4:170621045 | T/G | 4.01E-8 | 205 | 9.05 | 11.08 | 0.57 | KM Plot |
BLCA | rs625427 | chr11:65003812 | T/C | 0 | 214 | 2.73 | 12.37 | 8.87 | KM Plot |
BLCA | rs630055 | chr11:65087533 | G/T | 0.000152 | 216 | 5.13 | 13 | 8.58 | KM Plot |
BLCA | rs636928 | chr11:65093484 | A/C | 0 | 213 | 8.87 | 13 | 2.73 | KM Plot |
BLCA | rs640919 | chr15:40779963 | T/C | 3.18E-5 | 215 | 10.9 | 6.8 | 5.43 | KM Plot |
BLCA | rs6438423 | chr3:117560873 | T/C | 0.000131 | 215 | 6.57 | 2.48 | 10.13 | KM Plot |
BLCA | rs6438426 | chr3:117577223 | T/C | 0.000131 | 215 | 6.57 | 2.48 | 10.13 | KM Plot |
BLCA | rs6446477 | chr4:6245217 | A/G | 2.92E-5 | 216 | 5.13 | 14.07 | 9.07 | KM Plot |
BLCA | rs6484862 | chr11:36560795 | A/G | 2.04E-11 | 216 | 3.6 | 13.57 | 9.03 | KM Plot |
BLCA | rs650056 | chr11:65025106 | G/A | 3.87E-14 | 214 | 2.17 | 12.33 | 9.05 | KM Plot |
BLCA | rs655433 | chr11:65069275 | G/C | 1.15E-13 | 211 | 8.7 | 13 | 2.17 | KM Plot |
BLCA | rs6600222 | chr16:536631 | C/T | 2.13E-8 | 216 | 9.8 | 7.43 | 2.12 | KM Plot |
BLCA | rs66482644 | chr18:5245861 | G/C | 1.48E-7 | 216 | 9.07 | 12.43 | 4.73 | KM Plot |
BLCA | rs66486871 | chr18:5266321 | T/G | 7.98E-10 | 214 | 9.05 | 12.82 | 4.85 | KM Plot |
BLCA | rs667341 | chr11:65050182 | T/C | 0 | 216 | 9.03 | 12.4 | 2.73 | KM Plot |